roar - Identify differential APA usage from RNA-seq alignments
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Last updated 4 months ago
sequencinghighthroughputsequencingrnaseqtranscription
4 stars 1.58 score 49 dependenciesMatrixRider - Obtain total affinity and occupancies for binding site matrices on a given sequence
Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.
Last updated 4 months ago
generegulationgeneticsmotifannotation
1.00 score 116 dependencies