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roar - Identify differential APA usage from RNA-seq alignments
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Last updated
sequencinghighthroughputsequencingrnaseqtranscription
5.11 score 4 stars 16 scripts 597 downloadsMatrixRider - Obtain total affinity and occupancies for binding site matrices on a given sequence
Calculates a single number for a whole sequence that reflects the propensity of a DNA binding protein to interact with it. The DNA binding protein has to be described with a PFM matrix, for example gotten from Jaspar.
Last updated
generegulationgeneticsmotifannotation
3.30 score 5 scripts 534 downloads